Package index • SoundEcology2

All functions

aci(): Acoustic Complexity Index

aci_folder(): Acoustic Complexity Index - Batch process

add_replicate_id(): Add replicate id for a dataset with severall treatments

adi(): Acoustic Diversity Index

adi_folder(): Calculate the Acoustic Diversity Index on the Files in a Folder

adi_heatmap(): ADI Heatmap

aei(): Acoustic Evenness Index

aei_folder(): Acoustic Evenness Index - folder input

bbai(): Broadband Activity Index

bbai_folder(): Calculate BBAI for all the Files in a Folder

bi(): Bioacoustic Index

bi_folder(): Bioacoustic Index - folder input

dynamicity(): Calculate Soundscape Dynamicity

fadi(): Frequency-dependent Acoustic Diversity Index

fadi_folder(): Frequency-dependent Acoustic Diversity Index - folder input

fci(): Frequency Cover Indices (FCI)

fci_folder(): Frequency Cover Indices on Multiple WAV Files in a Folder

first_recording_hour(): Subsample a dataset with only the first recording in each hour

get_fft_params(): Calculate FFT Parameters

harmonize_index(): Harmonize "old" soundecology2 output with new SoundEcology2 table format

import_indices(): Import and Merge CSV Files Matching a Pattern

import_kaleidoscope(): Import tidy dataset from Kaleidoscope

import_kaleidoscope_batch(): Batch Import and Process Kaleidoscope Files in Parallel

import_stereo_mix(): Import a Stereo Wave File as Mono and Optionally Remove DC Offset

indices_summary(): Summary of Acoustic Indices

list_csvs(): List the CSV files in a directory

list_waves(): List wave files in a directory

mean_spectrum_flip(): Plot a Mean Spectrum with Flipped Axes

merge_index_results(): Merge Index Results from CSV Files

merge_se2_indices(): Merge CSV outputs of several indices calculated with SoundEcology2

nbai(): Narrow-Band Activity Index

nbai_folder(): Narrow-Band Activity Index for Files in a Folder

ndsi(): Normalized Difference Soundscape Index

ndsi_folder(): Normalized Difference Soundscape Index - folder input

spectral_dynamics(): Spectral Dynamics Analysis

spectrogram(): Plot a Spectrogram with Customizable Parameters

spectrogram_3d(): Generate a 3D Spectrogram

spectrogram_binary(): Generate a Binary Spectrogram

spectrogram_cutoff(): Generate a Spectrogram with Energy Cutoff

spectrogram_plotly(): Plot Spectrogram Using Plotly

summary_spectrograms(): Generate and Save Summary Spectrograms

tai(): Trill Activity Index

tai_folder(): Calculate Trill Activity Index for all the Files in a Folder

ts_circadian(): Plot Circadian Time-Series with LOESS Smoothing and Scaling Transformations

ts_long(): Create time series analysis and visualization for acoustic index data

ts_plus_images(): Create Interactive Time Series Plot with Image Popups

var_diel_spec(): Generate a Variance Diel Spectrogram from multiple Audio Recordings

wave_integrity_batch(): Compute file integrity diagnostics for several folders containing WAV files